Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs76272724 | chr16:2935676 | T/C | 0.000137 | 486 | 15.2 | 17.07 | 15.4 | KM Plot |
| THCA | rs7628619 | chr3:53905099 | C/T | 6.33E-15 | 483 | 16.07 | 16.77 | 10.35 | KM Plot |
| THCA | rs7628690 | chr3:122082241 | A/G | 7.46E-7 | 490 | 16.33 | 15.7 | 5.93 | KM Plot |
| THCA | rs76291959 | chr2:48099498 | C/T | 5.05E-8 | 489 | 15.27 | 19.47 | 8.27 | KM Plot |
| THCA | rs76292544 | chr9:95841741 | A/T | 2.02E-6 | 488 | 15.7 | 18.43 | 16.57 | KM Plot |
| THCA | rs76300007 | chr6:25363553 | A/G | 6.22E-15 | 487 | 15.17 | 22.67 | 16.72 | KM Plot |
| THCA | rs7631454 | chr3:127652261 | G/C | 0 | 490 | 16.37 | 14.82 | 6.03 | KM Plot |
| THCA | rs76329209 | chr6:26196430 | A/G | 2.21E-8 | 490 | 15.63 | 16.8 | 4.75 | KM Plot |
| THCA | rs76338552 | chr11:8606073 | C/T | 4.7E-5 | 489 | 15.9 | 17.85 | 20.07 | KM Plot |
| THCA | rs7635297 | chr3:127648092 | C/T | 0 | 490 | 16.33 | 14.93 | 6.03 | KM Plot |
| THCA | rs7636572 | chr3:53933804 | A/C | 3.89E-15 | 490 | 15.9 | 16.67 | 10.35 | KM Plot |
| THCA | rs7636626 | chr3:56544549 | C/T | 5.84E-5 | 489 | 16.67 | 13.1 | 8.97 | KM Plot |
| THCA | rs7636930 | chr3:155606862 | A/G | 0.000207 | 487 | 16.57 | 14.63 | 9 | KM Plot |
| THCA | rs76372699 | chr16:20706955 | A/G | 4.2E-5 | 485 | 16.38 | 14.3 | 17.65 | KM Plot |
| THCA | rs76391985 | chr6:24414381 | A/T | 6.88E-15 | 483 | 16.33 | 14.92 | 11.07 | KM Plot |